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Biotechnology and Biomedical Engineering
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Bioinformatics Virtual Lab III
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Surface Analysis of a Protein Using CASTp
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Surface Analysis of a Protein Using CASTp
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Theory
Procedure
Self Evaluation
Simulator
Assignment
Reference
Feedback
1)
The CASTp web server provide a comprehensive and detailed quantitative characterization of
Ligands and surface area
Function and structure
Surface pockets and interior voids
None of the above
2)
Which of following bond do you observe between the amide groups in primary structure of protein to form secondary structure?
Ionic bond
Hydrogen bond
Peptide bond
Covalent bond
3)
One of the inputs can be given to CASTp online tool for the protein analysis is
FASTA sequence
Swiss-Prot ID
TrEMBL ID
PDB ID
4)
The surface pockets of proteins are inaccessible to water molecules from outside
True
False
5)
To delineate and measure the surface pockets and voids in proteins, CASTp uses
analytical geometry
JMOL plug-in
alpha shape and the pocket algorithm
computational geometry
Cite this Simulator:
vlab.amrita.edu,. (2013). Surface Analysis of a Protein Using CASTp. Retrieved 29 March 2024, from vlab.amrita.edu/index.php?sub=3&brch=275&sim=1479&cnt=3
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