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Biotechnology and Biomedical Engineering
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Bioinformatics Virtual Lab II
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Pairwise Sequence Alignment using BLAST
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Pairwise Sequence Alignment using BLAST
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Theory
Procedure
Self Evaluation
Simulator
Assignment
Reference
Feedback
1)
TBLASTx refers to
Search translated nucleotide database using a translated nucleotide query
Search translated nucleotide database using a protein query.
Search translated nucleotide database using a nucleotide query
Search protein database using a protein query
2)
What is the default value for word size, when initial search was done for protein and nucleotide?
3,12
3,11
11,3
12,3
3)
In PHI-BLAST how many patterns can be used in one search
Many
one
Two
More than Two
4)
BLAST can be used to find the ______________between the sequences
Functional and evolutionary relationships
Functional relationships between sequences.
Evolutionary relationships between sequences
Only similarity between the sequences
5)
Mega BLAST searches
Highly similar sequences
Somewhat dissimilar sequence
Highly dissimilar sequence
Only some similar sequences
6)
Blast is a __________________tool
Multiple sequence alignment tool
Pair wise sequence alignment tool
Global alignment tool
Global and local alignment tool
Cite this Simulator:
vlab.amrita.edu,. (2012). Pairwise Sequence Alignment using BLAST. Retrieved 28 May 2023, from vlab.amrita.edu/?sub=3&brch=274&sim=1428&cnt=3
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