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Biotechnology and Biomedical Engineering
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Bioinformatics and Data Science in Biotechnology
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Pairwise sequence alignment of Protein or DNA sequences
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Pairwise sequence alignment of Protein or DNA sequences
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Theory
Procedure
PreTest
Simulator
PostTest
Assignment
Reference
Feedback
1)
Local alignments are most applied when:
Dissimilar sequences which are suspected to contain homologous regions
Large sequence having similarity index
There are homologous sequences which are of equal in length
None of the above
2)
Which of the following is not true to describe local alignment algorithm?
Score is always positive
Score is always negative
Absence of gap
None of the above
3)
Which one of the following is an approach to the global alignment?
LALIGN
Needleman-Wunch
BLAST
EMBOSS Water
4)
Scoring in Pairwise Sequence Alignment depends on
Mismatch
Match and Mismatch
Match
Mutation
5)
Pairwise sequence alignment methods are applicable in
Locating specific amino acid features
HMM making
Phylogenetic tree analysis
All the above
6)
Example of pairwise sequence alignment tools
ALLALIGN
GAP
NAP
All the above
Cite this Simulator:
vlab.amrita.edu,. (2020). Pairwise sequence alignment of Protein or DNA sequences. Retrieved 9 December 2024, from vlab.amrita.edu/?sub=3&brch=311&sim=1838&cnt=3779
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