Tasks to be performed

1.  Perform two sample DNA pairwise sequence alignment in R programming platform.
2. Align  FASTA formatted Keratin and Actin protein sequences of Homosapiens and Macaca mulattas, using R programming find out the scores and similarity index. 
3. You are provided with DNA sequence of a wild type mice and a mutant mice. With the knowledge of sequence alignment, find the match/mismatch score. Use R programming platform to find the matrix score.

             Mutant type

          5’-UGUACAUGAUGAAAACAGUCUCCCUCUUCUGAAUCUCGCUGAGGAA ACUGCACGUCACCCUCCUGAAA-3’

             Wild type

          5’-UGUACAUGAUGAAGUCAUAGCGAACGGAGAAGGGCCGGCUGAGGAAACUGCACGUCACCCUCCUGAAA-3’