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Pairwise sequence alignment of Protein or DNA sequences
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Tasks to be performed

 

  1.  Perform two sample DNA pairwise sequence alignment in R programming platform.
  2. Align  FASTA formatted Keratin and Actin protein sequences of Homosapiens and Macaca mulattas, using R programming find out the scores and similarity index. 
  3. You are provided with DNA sequence of a wild type mice and a mutant mice. With the knowledge of sequence alignment, find the match/mismatch score. Use R programming platform to find the matrix score.

             Mutant type

          5’-UGUACAUGAUGAAAACAGUCUCCCUCUUCUGAAUCUCGCUGAGGAA ACUGCACGUCACCCUCCUGAAA-3’

             Wild type

          5’-UGUACAUGAUGAAGUCAUAGCGAACGGAGAAGGGCCGGCUGAGGAAACUGCACGUCACCCUCCUGAAA-3’

       

 

 

Cite this Simulator:

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