 | Visualizing the Secondary Structure of a Protein Secondary structure of a protein is important to predict the function as well as to find out evolutionary relationship. Secondary structures thus plays an important role and can be visualized through different tools in form of cartoons, tubes, etc.. |
| Calculating the Distance between the Ligand and a Particular Amino acid To find out the distances between the Ligand and a particular Amino aid using PyMol. |
| Finding the Active Site Pockets of a given Protein Molecule Active site pockets of a protein molecule are important , where the potential ligand molecules bind to a protein. which can be visualized through different visualization tools. |
| Primary Structure Analysis of a Protein Using ProtParam To introduce a method to perform primary structure analysis of proteins which includes the computation of various physical and chemical parameters. |
| Secondary structure analysis of a protein using SOPMA The Self-Optimized Prediction method With Alignment (SOPMA) is a tool to predict the secondary structure of a protein. |
| Surface Analysis of a Protein Using CASTp To locate, measure and characterize the pockets located on the protein surfaces and the voids in the interior of proteins using the online resource CASTp (Computed Atlas of Surface Topography of proteins) |
| Retrieving details of a drug molecule To find the structure and activity of drug molecule. |
| Converting chemical file formats To convert chemical file formats according to the different platform. |
| Homology Modeling using Modeller Homology Modelling is the process of predicting structure from a given protein sequence using modeling software such as Modeller. |
| Protein- Ligand Interaction To carry out docking studies on the Protein-Ligand Interaction |
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