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Biotechnology and Biomedical Engineering
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Bioinformatics Virtual Lab III
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Secondary structure analysis of a protein using SOPMA
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Secondary structure analysis of a protein using SOPMA
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Theory
Procedure
Self Evaluation
Simulator
Assignment
Reference
Feedback
1)
SOPMA stands for _________________
a) The Self-Optimized Prediction method
b) The Secondary structure Prediction Method
c) The Self-Optimized Prediction method With Alignment
d) The Self-Optimized Protein Prediction method
2)
SOPMA is a tool to predict ____________________
a) primary structure of a protein
b) secondary structure of a protein
c) tertiary structure of a protein
d) quaternary structure of a protein
3)
The hydrophobic side chains will tend to _______________
attracted towards water environment
get away from water environment
no effect in water environment
none of the above
4)
The hydrophilic side chains will tend to _______________
no change in water environment
get away from water environment
attract towards water environment
none of the above
5)
SOPMA is using _______________ method of Levin et al.
Clustering
Structure alignment
Homologue
None of the above
Cite this Simulator:
vlab.amrita.edu,. (2012). Secondary structure analysis of a protein using SOPMA. Retrieved 9 December 2024, from vlab.amrita.edu/?sub=3&brch=275&sim=1454&cnt=3
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