. .
Smith-Waterman Algorithm - Local Alignment of Sequences





1. Take the Insulin protein (amino acid) sequences of two organisms like Octodon degus (AAA40590.1) which is a species of rodent (commonly called rat) and Cavia Porcellus (AAA37041.1), commonly called Guinea pig, also a species of rodent rat. Align both of the protein sequences using local alignment method based on a online tool “EMBOSS-water”( http://www.ebi.ac.uk/Tools/psa/emboss_water/) and find out the similarity percentage between the two protein sequences.


2. Find out the similarity percentage of the nucleotide sequences of the two organisms given in first question?



Cite this Simulator:

..... .....

Copyright @ 2022 Under the NME ICT initiative of MHRD

 Powered by AmritaVirtual Lab Collaborative Platform [ Ver 00.13. ]