Journals and Articles

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. "Cytoscape: a software environment for integrated models of biomolecular interaction networks.", Genome Research 2003 Nov; 13(11):2498-504 

Michael Smoot, Keiichiro Ono, Johannes Ruscheinski, Peng-Liang Wang, Trey Ideker. "Cytoscape 2.8: new features for data integration and network visualization.", Bioinformatics. 2011 February 1; 27(3): 431–432.Published online 2010 December 12. 

Text books

E. Klipp, R. Herwig, A. Kowald,C. Wierling, H. Lehrach. "Systems Biology in Practice Concepts, Implementation and Application", published by Wiley-VCH ISBN-13:978-3-527-31078-4

Webliography

1. ebookbrowse.com/w04-cytoscape-exercises-pdf-d105886146

2. wiki.cytoscape.org/Presentations

3. opentutorials.cgl.ucsf.edu/index.php/Tutorial:Introduction_to_Cytoscape

4. www.cbs.dtu.dk/phdcourse/cookbooks/SystemsBiology/BSA_SysBio_Exercise_1.htm

5. wiki.cytoscape.org/Cytoscape_User_Manual/Launching_Cytoscape

6. www.youtube.com/watch

7. en.wikipedia.org/wiki/Modelling_biological_systems

8. www.sysbio.de/info/background/WhatIs.shtml

9. www.sysbio.de/info/background/modeling.shtml