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Quantification of Stained Liver Cells


For informations about installation of the image analysis tool, access the “Simulator” tab


Step 1: Open ImageJ by double clicking ImageJ icon from the desktop or one may go to start programme ImageJ on the windows operating system.

The image will open in a new window as shown below
Step 2: To analyze an Image into ImageJ, we have to import the image into ImageJ. To perform that, Go to files ---> Open. A popup window will appear. Use Choose button to choose your respective images into ImageJ software. The imported picture will shown in a new window
Step 3: Convert the images into "grayscale” (go to image ---> Type ---> RGB stack). 
Step 4: Adjust the RGB grey scale manually by moving the lower slider
Step 5: Use the Image ---> Stacks ---> Make Montage command to view all three channels at the same time.

Step 6: Adjust the Image ---> Adjust ---> Threshold tool. The threshold must be manually adjusted by moving the lower slider until the stained liver tissue is highlighted in red. 


Step 7: Set threshold level and press “OK”

Step 8: Choose AnalyzeSet Measurements. The Set Measurements window opens. Select Area, Area fraction, Limit to Threshold and Display label measurements. Then click OK.

Step 9: To measure the selected area. Press Analyze ---> Measure. The Area and mean area of the stained samples appears in a new window.  Repeat the above steps until all bands have been measured. Then copy all the values to a spreadsheet. The quantified images are now ready for data analysis in the spreadsheet program.



Result Interpretation:


“Results” window indicates the Area and Percentage  area of the stained cells. Here 23.2555% of the area contains the stained cells. 


Cite this Simulator:

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